Publications from the biology dept., Aug. 2008

Recently published articles from WU Biology Dept. people, July, 2008

  • Cole ES, Anderson PC, Fulton R, Majerus ME, Rooney M, Savage JM, Chalker D, Honts J, Welch JE, Wentland AL, Zweifel E, Beussman DJ. A proteomics approach to cloning fenestrin from the nuclear exchange junction of tetrahymena. J Eukaryotic Micro 55:245-256. Abstract & fulltext for subscribers.
  • Haeusser DP, Levin PA. 2008. The great divide: coordinating cell cycle events during bacterial growth and division. Curr Opin Microbiol 11:94-9. PubMed abstract & fulltext for subscribers.
  • Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernàndez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman GW, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida K, Yoshizaki F, Yu JK, Zhang Q, Zmasek CM, de Jong PJ, Osoegawa K, Putnam NH, Rokhsar DS, Satoh N, Holland PW. 2008. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res 18:1100-11. PubMed abstract & fulltext for subscribers, free 6 months after publication.
  • Kolbe JJ, Larson A, Losos JB, de Queiroz K. 2008. Admixture determines genetic diversity and population differentiation in the biological invasion of a lizard species. Biol Lett 4:434-437. PubMed abstract & fulltext for subscribers, free 1 year after publication.
  • Kolbe JJ, Colbert PL, Smith BE. 2008. Niche relationships and interspecific interactions in Antiguan lizard communities. Copeia 2008: 261-272. Abstract & fulltext for BioOne subscribers.
  • Kong W, Wanda SY, Zhang X, Bollen W, Tinge SA, Roland KL, Curtiss R 3rd. 2008. Regulated programmed lysis of recombinant Salmonella in host tissues to release protective antigens and confer biological containment. Proc Natl Acad Sci U S A 105:9361-6. PubMed abstract & fulltext for subscribers, free 6 months after publication.
  • Pikaard CS, Haag JR, Ream T, Wierzbicki AT. 2008. Roles of RNA polymerase IV in gene silencing. Trends Plant Sci 13:390-397. PubMed abstract & fulltext for subscribers.
  • Ramula S, Knight TM, Burns J, Buckley YM. 2008. General guidelines for invasive plant management based on comparative demography of invasive and native plant populations. J Appl Ecol 45:1124-1133. Abstract & fulltext for subscribers.
  • Read EL, Schlau-Cohen GS, Engel GS, Wen J, Blankenship RE, Fleming GR. 2008. Visualization of excitonic structure in the Fenna-Matthews-Olson photosynthetic complex by polarization-dependent two-dimensional electronic spectroscopy. Biophys J 95:847-56. PubMed abstract & fulltext for subscribers, free 12 months after publication.
  • Wittenberg RD, Gifford ME. 2008. Funnel traps may be inappropriate for many studies of semi-aquatic snakes. J Freshwater Ecol. 23:213-218. [not available online]
  • Woo HR, Richards EJ. 2008. Signaling silence--breaking ground and spreading out. Genes Dev. 22:1719-23. PubMed abstract & fulltext for subscribers, free 1 year after publication.

Recently published articles from WU Biology Dept. people, June, 2008

Publications from WU biology dept. researchers in May 2008

New publications from WU Biology Dept., April 2008

New publications from WU Biology Dept., March 2008

  • Bawa KS, Balachander G, Raven P. 2008. A case for new institutions. Science 319:136. PubMed citation & fulltext for subscribers.
  • Beachy RN, Fedoroff NV, Goldberg RB, McHughen A. 2008. The burden of proof: a response to Rosi-Marshall et al. Proc Natl Acad Sci U S A. 105:E9; author reply E11. PubMed citation & fulltext for subscribers, free 6 months after publication.
  • Braude S, Goran D, Maxfield S. 2007. Case studies for understanding the human body. Sudbury, Mass: Jones and Bartlett Publishers. More book info.
  • Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD. 2007. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genet 3:1745-56. PubMed abstract & free fulltext.
  • Caperta AD, Neves N, Viegas W, Pikaard CS, Preuss S. 2007. Relationships between transcription, silver staining, and chromatin organization of nucleolar organizers in Secale cereale. Protoplasma 232:55-9. PubMed abstract &l fulltext for subscribers.
  • Gifford ME. 2008. Divergent character clines across a recent secondary contact zone in a Hispaniolan lizard. J Zool 274:292-300.Abstract & fulltext for subscribers.
  • Gu CC, Yu K, Ketkar S, Templeton AR, Rao DC. 2008. On transferability of genome-wide tagSNPs. Genet Epidemiol 32:89-97. PubMed abstract & fulltext for subscribers.
  • Igic B, Smith WA, Robertson KA, Schaal BA, Kohn JR. 2007. Studies of self-incompatibility in wild tomatoes: I. S-allele diversity in Solanum chilense (Dun.) Reiche [corrected] (Solanaceae). Heredity 99:553-61. Erratum in: Heredity. 99:562. PubMed abstract &l fulltext for subscribers.
  • Johnson MA, Leal M, Schettino LR, Lara AC, Revell LJ, Losos JB. 2008. A phylogenetic perspective on foraging mode evolution and habitat use in West Indian Anolis lizards. Animal Behav 75:555-563. Abstract & fulltext for subscribers.
  • Joo S, Liu Y, Lueth A, Zhang, S. 2008. MAPK phosphorylation-induced stabilization of ACS6 protein is mediated by the non-catalytic C-terminal domain, which also contains the cis-determinant for rapid degradation by the 26S proteasome pathway. Plant J 54:129-140. Abstract & fulltext for subscribers, free 18 months after publication.
  • Morris WF, Pfister CA, Tuljapurkar S, Haridas CV, Boggs CL, Boyce MS, Bruna EM, Church DR, Coulson T, Doak DF, Forsyth S, Gaillard JM, Horvitz CC, Kalisz S, Kendall BE, Knight TM, Lee CT, Menges ES. 2008. Longevity can buffer plant and animal populations against changing climatic variability. Ecology 89:19-25. Abstract & fulltext for subscribers.
  • Riddle NC, Birchler JA. 2008. Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels. Theor Appl Genet 116(4):563-76. PubMed abstract & fulltext for subscribers.
  • Scarcelli N, Cheverud JM, Schaal BA, Kover PX. 2007. Antagonistic pleiotropic effects reduce the potential adaptive value of the FRIGIDA locus. Proc Natl Acad Sci U S A 104:16986-91. PubMed abstract & fulltext for subscribers, free 6 months after publication.
  • Street IH, Shah PK, Smith AM, Avery N, Neff MM. 2008. The AT-hook containing proteins SOB3/AHL29 and ESC/AHL27 are negative modulators of hypocotyl growth in Arabidopsis. Plant J 54:1-14 PubMed abstract & fulltext for subscribers, free 18 months after publication.
  • Swingley WD, Blankenship RE, Raymond, J. 2008. Insights into cyanobacterial evolution from comparative genomics, pp. 21-44 IN The Cyanobacteria: Molecular Biology, Genomics and Evolution, ed. by E. Flores, A. Herrero. Horizon Scientific Press. More book info.
  • Swingley WD, Blankenship RE, Raymond J. 2008. Integrating Markov clustering and molecular phylogenetics to reconstruct the cyanobacterial species tree from conserved protein families. Mol Biol Evol 25:643-54. PubMed abstract & fulltext, freely available 12 months after publication.

New publications from WU Biology Dept. Feb. 2008

Miscellaneous tidbits that seemed interesting to me

I hope you find some of them valuable:
    - Earning of life sciences researchers    (Nat. Biotech. 26, 14; 2008)
    - Two collection of essays from Nature:  Connections and Science and Politics. More info
    - Science's take on the NIH Public Access Mandate: Uncle Sam's Biomedical Archive Wants Your Papers
    - New in the Nature Suppplements collection: Proteins to proteomes
    - Interesting entries on the validity of impact factors: http://library.duke.edu/blogs/scholcomm/2007/12/21/bad-impact/; http://scilibupdate.blogspot.com/2007/12/validity-of-journal-impact-factors.html.  Both of these are responding to an editorial published in the Journal of Cell Biology, Show me the data, by Mike Rossner, Heather Van Epps, and Emma Hill.
    - Our own Barbara Schaal and Peter Raven are both on the authoring committee of the new NAS book Science, Evolution and Creationism [freely available online; sign-in required); PDF Executive Summary
    - Nature is now using a creative commons licence for papers that include the primary sequence of an organism's genome for the first time.  This allows more powerful re-use and text-mining that the standard arrangement where the publisher requires an author to sign over all or most of their copyrights at publication.  More info.
    - Stevens Seventy Greatest Science Books, 1900+ (from Stevens Institute Center for Science Writing) [Thanks to John Dupuis]
    - International Field Guides -- a searchable database of field guides in print

Biology Researchers' publications Jan. 2008

  • Beck JB, Schmuths H, Schaal BA. 2008. Native range genetic variation in Arabidopsis thaliana is strongly geographically structured and reflects Pleistocene glacial dynamics. Mol Ecol 17:902-15. PubMed abstract & fulltext for subscribers.
  • Berg RH, Beachy RN. 2008. Fluorescent protein applications in plants. Methods Cell Biol 85:153-77. PubMed abstract & fulltext for subscribers.
  • Chen M, Zhang Y, Blankenship RE. 2008. Nomenclature for membrane-bound light-harvesting complexes of cyanobacteria. Photosynth Res 95:147-54. PubMed abstract | Fulltext for subscribers.
  • Gross BL, Turner KG, Rieseberg LH. 2007. Selective sweeps in the homoploid hybrid species Helianthus deserticola: evolution in concert across populations and across origins. Mol Ecol 16: 5246-5258. Abstract & fulltext for subscribers.
  • Haag JR, Pikaard CS. 2007. RNA polymerase I: a multifunctional molecular machine. Cell 131:1224-5. PubMed abstract & fulltext for subscribers; free 12 months after publication.
  • Jez JM, Schachtman DP, Berg RH, Taylor CG, Chen S, Hicks LM, Jaworski JG, Smith TJ, Nielsen E, Pikaard CS. 2007. Developing a new interdisciplinary lab course for undergraduate and graduate students: Plant cells and proteins. Biochem Mol Biol Educ 35: 410-415. Abstract & fulltext for subscribers.
  • Mather KA, Caicedo AL, Polato NR, Olsen KM, McCouch S, Purugganan MD. 2007. The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics 177:2223-32. PubMed abstract & fulltext for subscribers, free 3 months after publication.
  • Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto SI, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL. 2008. The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants. Science 319 (5859): 64-69. PubMed abstract & fulltext for subscribers | In the news: Moss genome tells of origin of land plants, WUSTL researchers spearhead key genome initiative: Findings promising for plant science, agriculture and human health.
  • Sanger TJ, Losos JB, Gibson-Brown JJ. 2008. A developmental staging series for the lizard genus Anolis: A new system for the integration of evolution, development, and ecology. J Morphol 269:129-37. PubMed abstract & fulltext for subscribers.
  • Silva MC, Boersma PD, Mackay S, Strange I. 2007. Egg size and parental quality in thin-billed prions, Pachyptila belcheri: effects on offspring fitness. Animal Behaviour 74:1403-1412/ Abstract & fulltext for subscribers.
  • Strasburg JL, Gross BL. 2008. Adapting to winter in wheat: a long-term study follows parallel phenotypic and genetic changes in three experimental wheat populations. Mol Ecol 17:716-8. PubMed abstract & fulltext for subscribers.
  • Suga N. 2008. Role of corticofugal feedback in hearing. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 194:169-83. PubMed abstract & fulltext for subscribers.
  • Torke BM, Schaal BA. 2008. Molecular phylogenetics of the species-rich neotropical genus Swartzia (Leguminosae, Papilionoideae) and related genera of the swartzioid clade. 95:215-228. Amer J Botany Abstract & fulltext for subscribers.

Biology Researchers' Publications, Dec. 2007